PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00012g03212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 432aa    MW: 48800.2 Da    PI: 7.5376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00012g03212.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07731126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                              ykt+lC  f++ G C++  +C+FaHg
  Peaxi162Scf00012g03212.1  7 YKTKLCVLFQQRGRCPR-QSCSFAHG 31
                              9****************.*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.972633IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027632IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11637IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6636IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGERKLYKTK LCVLFQQRGR CPRQSCSFAH GNAELRRFSD DSVPVRILSS IIGINKWVQF  60
AVKTRVLIAG RRDFRGRDLR EKLDRRRSPV GRYTDDRDAR ERNASHGRSP TESVGRRSDR  120
KRRMEHQSDG QSDISGNLNM SDGTGDHVKD KRYLSSNSRD VLQQRQLQSE IDMLDEQKQD  180
LESDLEETTR QADSLALKNQ ELEIEISKEK DECKRSEAQL QKLASKLSSD LVRIGENGED  240
SAISVSDEGM AGNHFNTLVE QQKNTSPNKK RPRIHREAGE NPNEVSTKGR GNASRRIAYP  300
TQLNNEKKDR AEFNRENGYK TLLGEEKSKK RNFSSDMIFA NKPKASDNAV VLPSTSMAAH  360
AADEDVEVVE TEENLEVAAN ATRRAGKGTP SGIPEYPFLP PPPPLPQGAY LQKYKCDDED  420
LLDEEAVEVD IV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630378.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2
TrEMBLK4DBB51e-167K4DBB5_SOLLC; Uncharacterized protein
STRINGSolyc12g005770.1.11e-166(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-27C3H family protein